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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22021482_22022912_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22021482 - 22022912
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTGTAG
5'SS Class:
major
3'SS Sequence:
TTTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
SIDTISEINMDYTATIFLRQ
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.1
53.8
39.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
42.4
-0.8
3.1
51.8
47.2
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012001
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012499
21999000 - 22032400
33401