About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22022981_22031874_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22022981 - 22031874
Intron Length:
8894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATTATTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.71
0.9
78.7
38.9
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012001
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012499
21999000 - 22032400
33401