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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22033197_22047812_F

Intron Information:

Intron Rank:
147339
Intron Class:
major
Intron Phase:
Intron Coordinates:
22033197 - 22047812
Intron Length:
14616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TATGCTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AGTCTCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
77
0.61
1
73.3
41.6
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
52.5
0.07
1.5
62.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029359
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018169
22032421 - 22048601
16181