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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22091879_22092943_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22091879 - 22092943
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCATTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATGAA
U12 Branch Point Sequence:
GTCTCCCCATTC
Flanking Amino Acid:
VQQVEVCKVEGPGISGYSHD
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
55.3
0.13
1.1
47.4
36
Major PPT
81.9
0.72
0.8
76.3
32
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
44.4
-0.4
2
56.1
42.4

Associated Gene:

Gene:
ENTPD1
Ensembl Gene ID:
ENSAPLG00000011301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040577
22050217 - 22095230
45014
ENSAPLT00000011809
22068097 - 22097018
28922
ENSAPLT00000043751
22067541 - 22095230
27690