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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22093975_22094560_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22093975 - 22094560
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
INYLLGNFKQSGWTKLLHSL
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
ENTPD1
Ensembl Gene ID:
ENSAPLG00000011301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043751
22067541 - 22095230
27690
ENSAPLT00000040577
22050217 - 22095230
45014
ENSAPLT00000011809
22068097 - 22097018
28922