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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22096310_22096517_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22096310 - 22096517
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
AGCCTGGTGACT
Flanking Amino Acid:
QSFCARPWHEVKEAYHQIKE
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
69.5
0.44
0.7
61.5
29
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
39
-0.7
2.4
54.64
41.3

Associated Gene:

Gene:
ENTPD1
Ensembl Gene ID:
ENSAPLG00000011301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011809
22068097 - 22097018
28922