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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22096656_22096811_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22096656 - 22096811
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
CCAGCCCTGATT
Flanking Amino Acid:
NWQRIHFLGKIGSSDAGWTL
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
73.8
0.54
0.8
65.4
36.1
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
47.5
-0.1
1.8
59.89
44.2

Associated Gene:

Gene:
ENTPD1
Ensembl Gene ID:
ENSAPLG00000011301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011809
22068097 - 22097018
28922