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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22108001_22108111_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22108001 - 22108111
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
CTTCTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAC
U12 Branch Point Sequence:
TTCTCCTCACAG
Flanking Amino Acid:
IPLPDNWKSQVEPETLAVIQ
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
66.1
0.4
1.1
69.1
37.9
Major PPT
81.7
0.71
0.7
75.9
26.2
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
49.4
-0.1
2
60.81
46.6

Associated Gene:

Gene:
CPN1
Ensembl Gene ID:
ENSAPLG00000011182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011638
22104734 - 22114924
10191