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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22109270_22109561_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22109270 - 22109561
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GGGCTTTGCATT
Flanking Amino Acid:
NGASWYSLSKGMQDFNYLYT
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.2
0.72
0.8
73.3
37.1
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
41.2
-0.6
1.7
50.97
37.4

Associated Gene:

Gene:
CPN1
Ensembl Gene ID:
ENSAPLG00000011182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011638
22104734 - 22114924
10191