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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22112128_22113673_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22112128 - 22113673
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CGGTTGTTATTC
Flanking Amino Acid:
TTVGPAEPSLVHFQLKQDVV
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.6
0.8
0.8
77.7
36
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
43.3
-0.5
2.2
49.61
41.8

Associated Gene:

Gene:
CPN1
Ensembl Gene ID:
ENSAPLG00000011182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011638
22104734 - 22114924
10191