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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22124459_22132240_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22124459 - 22132240
Intron Length:
7782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
CCTCTTGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTGCCACT
Flanking Amino Acid:
MGSGDGRTLRYRSACRP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.3
66
40.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.6
0.62
0.8
75.5
32.9
Minor 5ss
31.2
-2.2
3.3
37.5
40.6
Minor BPS
44.6
-0.3
2.5
73.31
43.7

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033714
22124436 - 22154149
29714