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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22125246_22132240_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22125246 - 22132240
Intron Length:
6995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACGC
5'SS Class:
major
3'SS Sequence:
CCTCTTGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTGCCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.2
41.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.6
0.62
0.8
75.5
32.9
Minor 5ss
31.7
-2.1
3.2
42.6
44.3
Minor BPS
44.6
-0.3
2.5
73.31
43.7

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042050
22125086 - 22154149
29064