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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22132420_22134722_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22132420 - 22134722
Intron Length:
2303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATTGTTGACA
Flanking Amino Acid:
WLLGKKEGVTGQFPSSFVEP
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.1
0.68
0.8
78.1
29
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
53.1
0.09
2.1
66.12
40.7

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018118
22128451 - 22154149
25699
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000037495
22131140 - 22154149
23010
ENSAPLT00000033714
22124436 - 22154149
29714
ENSAPLT00000028831
22128451 - 22154149
25699