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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22134846_22135418_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22134846 - 22135418
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTCC
5'SS Class:
major
3'SS Sequence:
TCATTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAATTTTGAACT
Flanking Amino Acid:
QEPGSLSLQRGDLVILGGSL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
68.6
37.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.9
0.67
0.8
74
30.9
Minor 5ss
45.2
-0.5
2.8
60.5
44
Minor BPS
59.3
0.37
1.4
70.34
40.5

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028831
22128451 - 22154149
25699
ENSAPLT00000018118
22128451 - 22154149
25699
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000037495
22131140 - 22154149
23010
ENSAPLT00000033714
22124436 - 22154149
29714