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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22137345_22148020_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22137345 - 22148020
Intron Length:
10676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TATTGCTGGAGG
Flanking Amino Acid:
SLSVELQELREMTLLSSQTP
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.5
0.66
0.9
72.9
37.4
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
45.4
-0.5
2.2
56.09
45.3

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028831
22128451 - 22154149
25699
ENSAPLT00000018118
22128451 - 22154149
25699
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000037495
22131140 - 22154149
23010
ENSAPLT00000033714
22124436 - 22154149
29714