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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22148911_22149604_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22148911 - 22149604
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
CTGCTGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TCCCACTTTACT
Flanking Amino Acid:
LSTLEASDAIGPVFLAQRAE
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
72.6
36.3
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
70.2
0.46
1
64.5
41.4
Minor 5ss
42.3
-0.8
2.8
56
42.3
Minor BPS
52.9
0.17
1.9
70.73
45.6

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033714
22124436 - 22154149
29714
ENSAPLT00000028831
22128451 - 22154149
25699
ENSAPLT00000018118
22128451 - 22154149
25699
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000011194
22139178 - 22154149
14972
ENSAPLT00000037495
22131140 - 22154149
23010