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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22149753_22150115_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22149753 - 22150115
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGAGCC
5'SS Class:
major
3'SS Sequence:
TGTGGGCCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
CTTTTTGGCACT
Flanking Amino Acid:
KLLVDLLDSLRSLYSEWGCT
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
60.1
40.3
Major BPS
50
0
1.5
63.1
44.5
Major PPT
57.7
0.17
1.1
50.9
43.9
Minor 5ss
26.7
-2.7
3.3
34.2
41.6
Minor BPS
42.9
-0.4
2.4
67.31
44.2

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033714
22124436 - 22154149
29714
ENSAPLT00000028831
22128451 - 22154149
25699
ENSAPLT00000011194
22139178 - 22154149
14972
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000037495
22131140 - 22154149
23010