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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22151405_22151648_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22151405 - 22151648
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TTTTCTCCCACA
Flanking Amino Acid:
LKHLTGFAPQLKDEAFEETE
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
85.5
0.8
0.7
80.7
24.6
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
48.4
-0.1
2.2
72.2
40

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028831
22128451 - 22154149
25699
ENSAPLT00000018118
22128451 - 22154149
25699
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000011194
22139178 - 22154149
14972
ENSAPLT00000037495
22131140 - 22154149
23010
ENSAPLT00000033714
22124436 - 22154149
29714