About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22152080_22152505_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22152080 - 22152505
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
CTCTGCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CTCATCTCACCT
Flanking Amino Acid:
LISDQLFSNFKERTERLVSS
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
63.1
36.9
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
67.5
0.39
0.9
59.2
37
Minor 5ss
29.2
-2.4
3.2
37
41.8
Minor BPS
47.3
-0.1
1.9
63.96
46.4

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033714
22124436 - 22154149
29714
ENSAPLT00000028831
22128451 - 22154149
25699
ENSAPLT00000018118
22128451 - 22154149
25699
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000011194
22139178 - 22154149
14972
ENSAPLT00000037495
22131140 - 22154149
23010