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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22152839_22153280_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22152839 - 22153280
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGGGTTCC
5'SS Class:
major
3'SS Sequence:
GCTCTGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTCCATCTAACT
Flanking Amino Acid:
ALEELRPLLSLLKVSGREGN
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
63.2
38.2
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
72.9
0.52
1
68.5
42.1
Minor 5ss
35.1
-1.7
3.1
44.8
43.3
Minor BPS
52.7
0.16
1.9
75.18
41.3

Associated Gene:

Gene:
DNMBP
Ensembl Gene ID:
ENSAPLG00000010732
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018118
22128451 - 22154149
25699
ENSAPLT00000042050
22125086 - 22154149
29064
ENSAPLT00000011194
22139178 - 22154149
14972
ENSAPLT00000037495
22131140 - 22154149
23010
ENSAPLT00000033714
22124436 - 22154149
29714
ENSAPLT00000028831
22128451 - 22154149
25699