Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22156604_22157003_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22156604 - 22157003

Intron Length:

400

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTGG

5'SS Class:

major

3'SS Sequence:

TCTCTGCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTCAA

U12 Branch Point Sequence:

GGGAGCTCAAGT

Flanking Amino Acid:

HRLHTIMDSNRVMVMNAGKI

Intron Amino Acid Position:

1507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

54.3

45.2

Major BPS

61.8

0.29

1.1

63.4

35.6

Major PPT

0.49

65.1

41.2

Minor 5ss

35.1

-1.7

3.4

47.5

47.9

Minor BPS

41.8

-0.5

2.2

54.56

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008620

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009170

22155474 - 22172796

17323