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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22157500_22157730_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22157500 - 22157730
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTGAA
U12 Branch Point Sequence:
CAGACGTGAACA
Flanking Amino Acid:
LRQNLTIIPQDPVLFTGTLR
Intron Amino Acid Position:
1387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
50.7
0.02
1.2
43
39.5
Major PPT
69.9
0.45
1
65.6
36
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
45.4
-0.3
2.2
54.15
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323