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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22157890_22158431_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22157890 - 22158431
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTTGCTTCCACA
Flanking Amino Acid:
ITCNIGSTEKVGVVGRTGAG
Intron Amino Acid Position:
1334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
81.6
0.71
0.8
76.4
32.3
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
50.8
0.02
2.1
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323