About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22158576_22158669_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22158576 - 22158669
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGCAT
U12 Branch Point Sequence:
AGCTCCCTAACA
Flanking Amino Acid:
VHEYTKVKREAAWVTEKRPP
Intron Amino Acid Position:
1286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
53.6
0.09
1.4
65.3
41.5
Major PPT
67.6
0.4
0.9
57.6
38.6
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
64.5
0.45
1.7
71.62
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323