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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22161642_22161960_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22161642 - 22161960
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
AACTGGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GACATCTGAACT
Flanking Amino Acid:
IEKEAVETGKVKFSMYLRYL
Intron Amino Acid Position:
966

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
62.2
0.27
1
53.5
40.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
55.9
0.26
1.5
67.57
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323