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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22162650_22163496_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22162650 - 22163496
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGAA
5'SS Class:
major
3'SS Sequence:
CCTGTGTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCTTCACCC
Flanking Amino Acid:
EEEAAEKNTTAVALEEVEEQ
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.4
0.48
0.9
65.3
36.2
Minor 5ss
27.5
-2.6
3.6
37.7
47
Minor BPS
56.4
0.18
1.9
70.01
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323