About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22164168_22164291_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22164168 - 22164291
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAGCC
5'SS Class:
major
3'SS Sequence:
CCTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
GCTCACAGAGGT
Flanking Amino Acid:
AGDQTEIGEKGINLSGGQKQ
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.2
59.6
38.1
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
83.8
0.76
0.7
80.7
24.6
Minor 5ss
43.3
-0.7
3.2
60.2
44.5
Minor BPS
35.3
-1
2
49.52
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323