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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22164469_22164647_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22164469 - 22164647
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
TGGTGATGAACC
Flanking Amino Acid:
ENIKGHINIQGSLAYVPQQA
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
72
0.5
1
65.3
41.1
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
47.2
-0.2
2.1
61.45
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323