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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22164775_22164970_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22164775 - 22164970
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
TGCTGCTTACTC
Flanking Amino Acid:
WEQDGNAAIRDVTLDIKPGS
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
86.2
0.81
0.8
80.6
31.4
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
49.7
-0
2
62.34
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323