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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22165804_22165970_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22165804 - 22165970
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTACCTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTGCTGCTACCT
Flanking Amino Acid:
IFVFTCAPFLVSLASFAVYV
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
69.6
0.44
0.9
60.8
39.9
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
39
-0.7
2.4
56.95
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323