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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22166109_22166541_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22166109 - 22166541
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTGCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
ACCTGCTCACCC
Flanking Amino Acid:
IMGEVLNGIKILKLFAWEPS
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
66.6
0.37
0.9
57.9
38.6
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
43.9
-0.4
2.1
52.28
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323