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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22166608_22167081_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22166608 - 22167081
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
GCTGACACAACC
Flanking Amino Acid:
FLVAKAKGIQVRNMKNKDER
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.2
76.2
39.9
Major BPS
79.2
0.72
1
75
40
Major PPT
88.4
0.86
0.6
84.8
22.9
Minor 5ss
29.8
-2.3
3.1
41.5
44.9
Minor BPS
43.4
-0.5
2
53.54
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323