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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22167337_22167706_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22167337 - 22167706
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CCCGCAGTGACT
Flanking Amino Acid:
ASLIAAIYKKALTMSSATRK
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
41.7
-0.5
2.3
55.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323