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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22170524_22171939_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22170524 - 22171939
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAC
U12 Branch Point Sequence:
CCTGCCTGAAGC
Flanking Amino Acid:
TNPSLYMVTWFLVLLIHDTR
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
41.3
Major BPS
51.9
0.05
1
50
35.5
Major PPT
82.6
0.73
0.7
74.8
35.5
Minor 5ss
38.5
-1.3
3.4
48.7
47
Minor BPS
49.1
-0
1.9
58.45
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009170
22155474 - 22172796
17323