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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22176342_22176667_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22176342 - 22176667
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGCGTGTG
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
SATAALGFVSKSKRCHGSIL
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.2
56.3
42.9
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
87
0.83
0.8
80.7
31.5
Minor 5ss
31.8
-2.1
3.5
40.1
45.9
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
CUTC
Ensembl Gene ID:
ENSAPLG00000029466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047651
22176300 - 22181238
4939