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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22176342_22176677_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22176342 - 22176677
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTGAG
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
WGIPSATAALGNPNVAMGAS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.2
57
42
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
87
0.83
0.8
80.7
31.5
Minor 5ss
34
-1.8
2.9
32.9
42.2
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
CUTC
Ensembl Gene ID:
ENSAPLG00000029466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024264
22176230 - 22181238
5009