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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22177461_22178148_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22177461 - 22178148
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GTATCACTAACG
Flanking Amino Acid:
LSLIKKLAEQAKGRIVVVPG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
52.5
-0
2
63.76
43.1

Associated Gene:

Gene:
CUTC
Ensembl Gene ID:
ENSAPLG00000029466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047651
22176300 - 22181238
4939
ENSAPLT00000036981
22176230 - 22181238
5009
ENSAPLT00000024264
22176230 - 22181238
5009
ENSAPLT00000019434
22176230 - 22181238
5009