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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22178283_22178693_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22178283 - 22178693
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATTGGTTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GATTCCTGAACT
Flanking Amino Acid:
CRPLPVTFHRAFDMVHDPQV
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
75.9
0.58
0.9
70
40.8
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
77.2
0.93
1.4
87.68
36.7

Associated Gene:

Gene:
CUTC
Ensembl Gene ID:
ENSAPLG00000029466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036981
22176230 - 22181238
5009
ENSAPLT00000024264
22176230 - 22181238
5009
ENSAPLT00000019434
22176230 - 22181238
5009
ENSAPLT00000047651
22176300 - 22181238
4939