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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22178730_22179781_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22178730 - 22179781
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCCTTCTTATTG
Flanking Amino Acid:
IDTELCTALLAACRPLPVTF
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86
0.81
0.8
81.1
29.3
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
49.9
-0.1
1.7
50.8
44.3

Associated Gene:

Gene:
CUTC
Ensembl Gene ID:
ENSAPLG00000029466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036981
22176230 - 22181238
5009
ENSAPLT00000024264
22176230 - 22181238
5009
ENSAPLT00000019434
22176230 - 22181238
5009
ENSAPLT00000047651
22176300 - 22181238
4939