About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22179992_22180168_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22179992 - 22180168
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
CTGTCCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCCTCTTCACCT
Flanking Amino Acid:
LVEGGTTPSMGLLQVVKQCV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
57.4
41.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
66
0.36
1
58.6
38.4
Minor 5ss
26.1
-2.7
3
26
36.4
Minor BPS
53.3
0.18
1.9
71.32
46.1

Associated Gene:

Gene:
CUTC
Ensembl Gene ID:
ENSAPLG00000029466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024264
22176230 - 22181238
5009