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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22179992_22180324_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22179992 - 22180324
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCCTCTTCACCT
Flanking Amino Acid:
VESAVNAERGGLLQVVKQCV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
66
0.36
1
58.6
38.4
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
53.3
0.18
1.9
71.32
46.1

Associated Gene:

Gene:
CUTC
Ensembl Gene ID:
ENSAPLG00000029466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019434
22176230 - 22181238
5009