Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22226157_22226453_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22226157 - 22226453

Intron Length:

297

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

TTTGCTTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTGAT

U12 Branch Point Sequence:

CTGCTCTGACCT

Flanking Amino Acid:

IGMFSFTGLNPKQVEYMIKE

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.3

71.9

39.6

Major BPS

0.5

59.3

39.1

Major PPT

0.7

0.8

73.4

37.1

Minor 5ss

37.9

-1.4

2.7

48.5

40.3

Minor BPS

48.5

-0

1.8

65.52

Associated Gene:

Gene:

GOT1

Ensembl Gene ID:

ENSAPLG00000008121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008428

22223432 - 22226728

3297

ENSAPLT00000041138

22223168 - 22226593

3426