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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22229643_22230003_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
22229643 - 22230003
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTCAG
U12 Branch Point Sequence:
GCGGCGTCAGGG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
42.3
-0.4
1.7
45
47.8
Major PPT
75.7
0.58
1
65.9
45.3
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
30.8
-1.5
2.2
27.43
42.1

Associated Gene:

Gene:
CNNM1
Ensembl Gene ID:
ENSAPLG00000007945
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008245
22229302 - 22245355
16054