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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22230418_22230500_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22230418 - 22230500
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TGGGCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
GGCGCTGCAGCC
Flanking Amino Acid:
PEHEDNSKQQDRECCGTGLE
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
73
0.52
1
65.7
40.9
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
35.6
-1.1
2.1
39.48
39.9

Associated Gene:

Gene:
CNNM1
Ensembl Gene ID:
ENSAPLG00000007945
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008245
22229302 - 22245355
16054