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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22230894_22231008_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22230894 - 22231008
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
GCCAGCTGAGCC
Flanking Amino Acid:
HILCDVQFVKVTRQQYQNAL
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
68.8
0.42
1
60.8
44.7
Minor 5ss
40.5
-1.1
3.3
55.3
48.9
Minor BPS
40.7
-0.7
2
44.58
43.2

Associated Gene:

Gene:
CNNM1
Ensembl Gene ID:
ENSAPLG00000007945
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008245
22229302 - 22245355
16054