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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22233157_22233291_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22233157 - 22233291
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCGCCTTCAACT
Flanking Amino Acid:
VPAIMAIVSSDSDVRKVSSL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.1
0.63
0.9
74.3
34.4
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
54.7
0.23
1.6
66.33
44.2

Associated Gene:

Gene:
CNNM1
Ensembl Gene ID:
ENSAPLG00000007945
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008245
22229302 - 22245355
16054