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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22233780_22234084_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
22233780 - 22234084
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTTG
5'SS Class:
weak_major
3'SS Sequence:
GCCTCCCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CCTCCCCTATAG
Flanking Amino Acid:
LLATHRFMATEVEPFKSPYL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
60.8
46.5
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
68.7
0.42
0.8
61.5
29.2
Minor 5ss
56.8
0.23
2.7
73.3
43.6
Minor BPS
42.9
-0.6
2
46.74
45.6

Associated Gene:

Gene:
CNNM1
Ensembl Gene ID:
ENSAPLG00000007945
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008245
22229302 - 22245355
16054