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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22262527_22273347_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22262527 - 22273347
Intron Length:
10821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
CCTTTTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCCAT
U12 Branch Point Sequence:
TTTTCTTTCCCT
Flanking Amino Acid:
PDYYLKNYEDDIVRSDIALD
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
57.9
41.8
Major BPS
48.8
-0
1.5
58.2
48.3
Major PPT
77.5
0.62
0.8
73
31.9
Minor 5ss
31.7
-2.1
3.3
41.6
45.3
Minor BPS
47.8
-0
3.6
87.23
39

Associated Gene:

Gene:
HPSE2
Ensembl Gene ID:
ENSAPLG00000027024
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024628
22259389 - 22350960
91572