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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22273510_22330815_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22273510 - 22330815
Intron Length:
57306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTCCTTTGAACT
Flanking Amino Acid:
SNTYSNLTLTARSLDKLYNF
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
74.8
0.62
1
67
39.8
Major PPT
84.3
0.77
0.8
77
37.2
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
62.7
0.48
1.4
77.64
38.9

Associated Gene:

Gene:
HPSE2
Ensembl Gene ID:
ENSAPLG00000027024
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024628
22259389 - 22350960
91572