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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22331673_22338008_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22331673 - 22338008
Intron Length:
6336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
GTGGTCTGATTC
Flanking Amino Acid:
PRKNVIALLEGYYIDGRVAK
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
34.3
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
32.5
-2
3.1
35.2
41.4
Minor BPS
44.9
-0.4
1.7
51.02
40.4

Associated Gene:

Gene:
HPSE2
Ensembl Gene ID:
ENSAPLG00000027024
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024628
22259389 - 22350960
91572